本周我们将介绍几个癌症相关的数据库,今天介绍的是CCLE(Cancer Cell Line Encyclopedia),它是Board Institute维护的一个癌症细胞系的数据库,目前有1,400多个cell line。
网站链接:https://portals.broadinstitute.org/ccle_legacy/home
导航栏的ANALYSIS TOOLS,可以选择如下工具进行分析(登录后才能使用该网站的完整功能)
Integrative Genomics Viewer (IGV)
A high performance integrated visualization of copy number, gene expression, phenotype and other genomic data.
GENE-E
A high performance visualization and analysis tool for RNAi and gene expression data.
Differential Expression
Heat map visualization and tabular results showing the differentially expressed genes.
Gene Neighbors
Heat map visualization showing gene expression values for co-expressed genes.
Gene Set Enrichment Analysis (GSEA)
A report showing pathway gene sets correlated with phenotype classes of interest.
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