【LorMe云讲堂】邓晔：宏基因组技术与微生物生态学研究

第五期

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2020年7月16日 上午10点 

本期主讲 | 中国科学院生态环境研究中心  邓晔 研究员

研究内容 | 宏基因组技术与微生物生态学

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(I) 微生物地理学研究

1. Huayu Qin, Shang Wang, Kai Feng, Zhili He, Virta Marko P J, Weiguo Hou, Hailiang Dong, Ye Deng*. Unraveling the diversity of sedimentary sulfate-reducing prokaryotes (SRP) across Tibetan saline lakes using epicPCR. Microbiome. 2019.

DOI: 10.1186/s40168-019-0688-4

2. Xiao Kong, Decai Jin, Xin Tai, Hao Yu,Guilan Duan, Xiulan Yan, Jiangang Pan, Junhua Song, Ye Deng*. Bioremediation of dibutyl phthalate in a simulated agricultural ecosystem by Gordonia sp. strain QH-11 and the microbial ecological effects in soil. Science of the Total Environment. 2019.

DOI: 10.1016/j.scitotenv.2019.02.385

3. Shang Wang, Xiaobo Wang, Xingguo Han, Ye Deng*. Higher precipitation strengthens the microbial interactions in semi-arid grassland soils. Global Ecology and Biogeography. 2018.
DOI: 10.1111/geb.12718

4. Yuguang Zhang*, Xiao Liu, Jing Cong, Hui Lu, Yuyu Sheng, Xiulei Wang, Diqiang Li, Xueduan Liu, Huaqun Yin, Jizhong Zhou, Ye Deng*. The microbially-mediated soil organic carbon loss under degenerative succession in an alpine meadow. Molecular Ecology. 2017.

DOI: 10.1111/mec.14148

5. Jizhong Zhou*, Ye Deng*, Lina Shen, Chongqing Wen, Qingyun Yan, Daliang Ning, Yujia Qin, Kai Xue, Liyou Wu, Zhili He, James W. Voordeckers, Joy van Nostrand, Vanessa Buzzard, Sean T. Michaletz, Brian J. Enquist, Michael D. Weiser, Michael Kaspari, Robert Waide, Yunfeng Yang, James H. Brown. Correspondence: Reply to “Analytical flaws in a continental-scale forest soil microbial diversity study”. Nature Communications. 2017.

DOI: 10.1038/ncomms15583

(II) 生态模型与理论研究

6.Kai Feng, Yuguang Zhang, Zhili He, Daliang Ning, Ye Deng. Interdomain ecological networks between plants and microbes. Molecular Ecology Resources. 2019.

DOI: 10.1111/1755-0998.13081

7.Kai Feng, Zhaojing Zhang, Weiwei Cai, Wenzong Liu, Meiying Xu, Huqun Yin, Aijie Wang, Zhili He, Ye Deng*. Biodiversity and species competition regulate the resilience of microbial biofilm community. Molecular Ecology. 2017.

DOI: 10.1111/mec.14356

8.Ye Deng, Ping Zhang, Yujia Qin, Qichao Tu, Yunfeng Yang, Zhili He, Christopher Warren Schadt, Jizhong Zhou*, Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation. Environmental Microbiology. 2016.
DOI: 10.1111/1462-2920.12981

(III) 宏基因组方法学和应用
9.Ziyan Wei, Kai Feng, Shuzhen Li, Yu Zhang, Hongrui Chen, Huaqun Yin, Meiying Xu, Ye Deng*. Exploring abundance, diversity and variation of a widespread antibiotic resistance gene in wastewater treatment plants. Environment International. 2018.

DOI: 10.1016/j.envint.2018.05.009

10.Xiaoxia Zhang, Ruijie Zhang, Jusheng Gao, Xiucheng Wang, Fenliang Fan, Xiaotong Ma, Huaqun Yin, Caiwen Zhang, Kai Feng, Ye Deng*. Thirty-one years of Rice-Rice-Green Manure rotations shape the rhizosphere microbial community and enrich beneficial bacteria. Soil Biology & Biochemistry. 2017.

DOI: 10.1016/j.soilbio.2016.10.023